[BioC] How to generate an annotation library without CDF file?

[Shu-wen Huang]

Hi benilton,

Our group generated a particular list of probes. It's not available in BioConductor. Do you mean I should try to generate a library from PGF file? Thanks!


Sw

-----Original Message-----
From: Benilton Carvalho [mailto:beniltoncarvalho at gmail.com] 
Sent: Saturday, April 14, 2012 6:29 PM
To: Shu-wen Huang
Cc: bioconductor at r-project.org
Subject: Re: [BioC] How to generate an annotation library without CDF file?

PGFs are given for Gene/Exon ST arrays... and chances are that the package you need is already on BioConductor. (btw, a CDF for such array design is not recommended by Affymetrix themselves)

Check Sections 1 and 4 of the document below:

http://bioconductor.org/packages/release/bioc/vignettes/oligo/inst/doc/primer.pdf

benilton