[BioC] mapping information \"QualityScore\" appears missing in lumiHumanIDMapping versions 1.8.0 and 1.10.0
Holger [guest]
guest at bioconductor.org
Thu Apr 12 15:30:37 CEST 2012
Dear List,
it seems that (at least the windows binaries) of packages lumiHumanIDMapping version 1.8.0 and 1.10.0 miss some mapping information. Examplarily the "QualityScore" is not availabe. However, within the pdf manual this information is still described
Thanks for any information about that!
Holger
> require(lumiHumanIDMapping)
> conn <- lumiHumanIDMapping_dbconn()
> dbListFields(conn, 'nuID_MappingInfo')
[1] "nuID" "Accession" "EntrezID" "Symbol"
-- output of sessionInfo():
> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumiHumanIDMapping_1.10.0 RSQLite_0.10.0 DBI_0.2-5 AnnotationDbi_1.16.5
[5] lumi_2.6.0 nleqslv_1.9.0 methylumi_2.0.1 Biobase_2.14.0
loaded via a namespace (and not attached):
[1] affy_1.32.0 affyio_1.22.0 annotate_1.32.0 BiocInstaller_1.2.1 grid_2.14.0
[6] hdrcde_2.15 IRanges_1.12.3 KernSmooth_2.23-6 lattice_0.20-0 MASS_7.3-16
[11] Matrix_1.0-1 mgcv_1.7-9 nlme_3.1-102 preprocessCore_1.16.0 tools_2.14.0
[16] xtable_1.6-0 zlibbioc_1.0.0
--
Sent via the guest posting facility at bioconductor.org.
More information about the Bioconductor
mailing list