[BioC] GenomicRanges::summarizeOverlaps without strands?

[Sang Chul Choi]

Hi,

Can I use GenomicRanges::summarizeOverlaps without strand information? I have short reads without strand information, and I want to count them on GRanges object.  Can I simply set strand "*" for both GRanges object and GappedAlignments object?  If that is the case, can I use readBamGappedAlignments to set strand "*"?

Thank you,

SangChul