[BioC] ERROR: Length of \'group\' must equal number of columns in \'data\'
aliaselin [guest]
guest at bioconductor.org
Thu Apr 5 14:48:06 CEST 2012
I'm trying to use edgeR to analyse RNA-seq data following the guidance of "edgeR: differential expression analysis of digital gene expression data".
I have done exactly as the manual told and when tapping the command "d <-
DGEList(counts=d, group=group)", then an error comes as "é误äºDGEList(counts = d, group = group) :
Length of 'group' must equal number of columns in 'data'
"
However, length(group) shows that the length of the group is 7, and dim(d) = 37435 7.
So I think they two are equal, so why I got this error?
Many thanks!
-- output of sessionInfo():
R version 2.9.1 (2009-06-26)
x86_64-redhat-linux-gnu
locale:
LC_CTYPE=zh_CN.UTF-8;LC_NUMERIC=C;LC_TIME=zh_CN.UTF-8;LC_COLLATE=zh_CN.UTF-8;LC_MONETARY=C;LC_MESSAGES=zh_CN.UTF-8;LC_PAPER=zh_CN.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=zh_CN.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_1.2.4 Biobase_2.4.1
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