[BioC] SeattleIntro2011

[Dan Tenenbaum]

Hi Yifang,

On Wed, Apr 4, 2012 at 9:03 AM, YIfang Tan [guest]
<guest at bioconductor.org> wrote:
>
> Hi Martin!
>
> I was trying to install package "SeattleIntro2011" but never succeed and got the warning message "package SeattleIntro2011 is not available for R version 2.15.0".  Also I tried Bioconductor to get the source code, no luck either.
> I was wondering where I can get more information about this package, as it is very good starter kit for NGS analysis.
>
> However, SeattleIntro2011Data can be installed without any problem. Could you please give me any clue
>


At the time this course was given, R-2.14 was current. The packages
will work with R-2.14.

Dan


> Thanks a lot!
>
> Yifang
>
>
>  -- output of sessionInfo():
>
>> sessionInfo()
> R version 2.15.0 (2012-03-30)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>  [1] LC_CTYPE=en_CA.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_CA.UTF-8        LC_COLLATE=en_CA.UTF-8
>  [5] LC_MONETARY=en_CA.UTF-8    LC_MESSAGES=en_CA.UTF-8
>  [7] LC_PAPER=C                 LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
>  [1] Biostrings_2.24.0          BiocInstaller_1.4.3
>  [3] lattice_0.20-6             SeattleIntro2011Data_0.0.3
>  [5] edgeR_2.6.0                limma_3.12.0
>  [7] GenomicFeatures_1.8.0      AnnotationDbi_1.18.0
>  [9] Biobase_2.16.0             GenomicRanges_1.8.2
> [11] IRanges_1.14.2             BiocGenerics_0.2.0
>
> loaded via a namespace (and not attached):
>  [1] biomaRt_2.12.0     bitops_1.0-4.1     BSgenome_1.24.0    DBI_0.2-5
>  [5] grid_2.15.0        RCurl_1.91-1       Rsamtools_1.8.0    RSQLite_0.11.1
>  [9] rtracklayer_1.16.0 stats4_2.15.0      tools_2.15.0       XML_3.9-4
> [13] zlibbioc_1.2.0
>>
>
>
>
>
> --
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>
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