[BioC] Rgraphviz windows version incompatible with current Graphviz
Martin Morgan
mtmorgan at fhcrc.org
Sat Mar 26 15:02:02 CET 2011
On 03/26/2011 06:37 AM, Richard Gill wrote:
> Help!
>
> The current RGraphviz on windows requires graphviz-2.20.3. This is no
> longer available from the graphviz web pages, except as source code
> which you must build yourself. Does anyone have a better solution?
Hi Richard --
The README file (see
http://bioconductor.org/help/bioc-views/release/bioc/html/Rgraphviz.html
for location, in the .tar.gz archive) says, correctly, that:
o. install Graphviz ***2.20.3.1*** Windows ***binary*** distribution from
http://www.graphviz.org/pub/graphviz/stable/windows/graphviz-2.20.3.1.msi
in a directory that we'll call $DIR. We use the following as an
example:
C:\Graphviz2.20
If you install it in other dir, just use your dir correspondingly.
o. Add Graphviz' bin diretory to the user PATH variable, e.g.,
c:\Graphviz2.20\bin
o. Check the configuration by starting a new DOS window and displaying
the PATH environment variable, e.g.,
c:\> echo %PATH%
o. Use biocLite('Rgraphviz') to install Rgraphviz
>
> Thanks in advance
> Richard Gill
>
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