[BioC] Get Gene annotation (GO terms)

[David martin]

Perfect it's human,
I guess i can then use any of the GO packages to get signficant Goterms. 
Which one would you suggest ?

On 03/17/2011 10:16 PM, Marc Carlson wrote:
> What species? Those look like human gene symbosl, so I will give an
> example for that:
>
> library(org.Hs.eg.db)
> sym <- c("ACSL1","ADAMTSL1","ATG2B","BACH2")
> ## Then you can just merge together the GO to entrez gene mappings with
> the SYMBOL to entrez gene mappings like this:
> merge(toTable(org.Hs.egSYMBOL2EG[sym]), toTable(org.Hs.egGO), by.x=
> "gene_id", by.y="gene_id")
>
> Does that make sense?
>
>
> Marc
>
>
> On 03/17/2011 02:11 PM, David martin wrote:
>> Hi,
>> Which package should i use to convert a list of gene names
>> (ACSL1,ADAMTSL1,ATG2B,BACH2...) into Go id. The idea behind is to get
>> a list of significant GO terms based on the input genes).thanks for
>> pointing me to right direction.
>>
>> thanks,
>> david
>>
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