[BioC] openVignette(Biobase) and citation(Biobase) give errors after installing Biobase
Vincent Carey
stvjc at channing.harvard.edu
Tue Mar 15 16:36:21 CET 2011
The error messages are exactly correct. you can use openVignette()
with no argument, and pass a quoted string to citation, e.g.,
citation("Biobase")
On Tue, Mar 15, 2011 at 11:28 AM, Louis Peperzak
<louispeperzak at hotmail.com> wrote:
>
> Goodday,
>
> After installing Biobase I tried openVignette() and citation() but with the error messages following below.
> R 2.12.1 and Biobase_2.10.0.zip were used.
>
>> library(Biobase)
> Welcome to Bioconductor
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Attaching package: 'Biobase'
> The following object(s) are masked from 'package:Hmisc':
> combine, contents
>> search()
> [1] ".GlobalEnv" "package:Biobase" "package:grDevices" "package:datasets" "package:svSocket" "package:TinnR" "package:R2HTML" "package:Hmisc" "package:survival" "package:splines"
> [11] "package:graphics" "package:stats" "package:tcltk" "package:utils" "package:methods" "TempEnv" "Autoloads" "package:base"
>> openVignette(Biobase)
> Error in getPkgVigs(package) : object 'Biobase' not found
>> openVignette(base)
> Error in getPkgVigs(package) : object 'base' not found
>> citation(Biobase)
> Error in system.file(package = package, lib.loc = lib.loc) :
> object 'Biobase' not found
>>
>
> [[alternative HTML version deleted]]
>
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