[BioC] openVignette(Biobase) and citation(Biobase) give errors after installing Biobase

Vincent Carey stvjc at channing.harvard.edu
Tue Mar 15 16:36:21 CET 2011


The error messages are exactly correct.  you can use openVignette()
with no argument, and pass a quoted string to citation, e.g.,
citation("Biobase")

On Tue, Mar 15, 2011 at 11:28 AM, Louis Peperzak
<louispeperzak at hotmail.com> wrote:
>
> Goodday,
>
> After installing Biobase I tried openVignette() and citation() but with the error messages following below.
> R 2.12.1 and Biobase_2.10.0.zip were used.
>
>> library(Biobase)
> Welcome to Bioconductor
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Attaching package: 'Biobase'
> The following object(s) are masked from 'package:Hmisc':
>    combine, contents
>> search()
>  [1] ".GlobalEnv"        "package:Biobase"   "package:grDevices" "package:datasets"  "package:svSocket"  "package:TinnR"     "package:R2HTML"    "package:Hmisc"     "package:survival"  "package:splines"
> [11] "package:graphics"  "package:stats"     "package:tcltk"     "package:utils"     "package:methods"   "TempEnv"           "Autoloads"         "package:base"
>> openVignette(Biobase)
> Error in getPkgVigs(package) : object 'Biobase' not found
>> openVignette(base)
> Error in getPkgVigs(package) : object 'base' not found
>> citation(Biobase)
> Error in system.file(package = package, lib.loc = lib.loc) :
>  object 'Biobase' not found
>>
>
>        [[alternative HTML version deleted]]
>
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