[BioC] iFlow/flowCore installation problem

[Dan Tenenbaum]

On Mon, Mar 14, 2011 at 12:27 PM, Gabriel Nathan Kaufman, Mr
<gabriel.kaufman at mail.mcgill.ca> wrote:
> I got R 2.13 as a binary from from http://r.research.att.com/R-devel-leopard.pkg
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> I tried to load iFlow in both the 32- and 64-bit GUI, but was only able to make it load when running R in 32-bit mode from the Terminal... I am going to try a binary install of graph in the 64-bit GUI (my preferred method of running R), and then see what happens.
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Thanks! Let me know and keep it on the list as well so we can all
benefit from what you find out.
Dan


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> Gabriel Kaufman
> McGill University Complex Traits Group
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> From: Dan Tenenbaum [dtenenba at fhcrc.org]
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> Sent: March 13, 2011 8:28 PM
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> To: Gabriel Nathan Kaufman, Mr
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> Cc: bioconductor at r-project.org
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> Subject: Re: [BioC] iFlow/flowCore installation problem
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> OK, a few thoughts....
> How did you get R-2.13? Did you build from source or get binaries from somewhere, and if so, where?
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> Was the output you sent in your first email from the R GUI? Did you click on R.app or R64.app?
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> By default, if memory serves, the R GUI runs in 32-bit mode (though your initial report showed R running in 64 bit mode) and the command line R runs in 64-bit mode.
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> You got it working by using the command line (console) but you didn't indicate whether you were using the --arch i386.
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> The bioconductor package 'graph' comes with the BioC_graph.so library built for all architectures:
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>  tar ztf graph_1.29.3.tgz |grep BioC_graph.so
> graph/libs/i386/BioC_graph.so
> graph/libs/ppc/BioC_graph.so
> graph/libs/x86_64/BioC_graph.so
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> So you may want to try a binary install:
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> biocLite("graph", type="mac.binary.leopard")
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> Dan