[BioC] gcrma - u133aaofav2probe error

[James W. MacDonald]

Hi Myrto,

On 3/14/2011 7:58 AM, Myrto Kostadima wrote:
> Hi,
> I am currently trying to analyse microarray data from this publicly
> available dataset:
> GSE24759<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE24759>
> Platform: [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array
>
> When using gcrma on the data:
>> marray.eset.gcrma<- gcrma(marray.data)
>
> I get the following error:
>
> [1] "Environment u133aaofav2probe was not found in the Bioconductor
> repository."
> Error in get(probepackagename) : object 'u133aaofav2probe' not found
>
> The only package that is available on Bioconducttor is: u133aaofav2cdf
>
> I have not been able to find a solution online. Anybody who could help with
> that?

Unfortunately we have never been able to get hold of the probe file for 
this array, so have not been able to make the probe package. If anybody 
out there happens to have the probe file, I would appreciate an off-line 
response.


Best,

Jim


>
> Thanks,
> Myrto
>

-- 
James W. MacDonald, M.S.
Biostatistician
Douglas Lab
University of Michigan
Department of Human Genetics
5912 Buhl
1241 E. Catherine St.
Ann Arbor MI 48109-5618
734-615-7826
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