[BioC] iFlow/flowCore installation problem

[Gabriel Nathan Kaufman, Mr]

I recently tried to install the bleeding-edge version of iFlow, and I think I am doing something wrong with one of its dependencies (console copied below). In short, I cannot seem to load flowCore properly, and the problem persists even when I try to re-install it from source. I have gone as far as completely re-installing R, Biobase, and flowCore - nothing seems to allow it to load. Any ideas?



Thank you in advance for your time and attention.

Gabriel Kaufman
McGill University Complex Traits Group


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> library(iFlow)
Loading required package: flowCore
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so
  Reason: image not found
Error: package 'flowCore' could not be loaded

> library(flowCore)
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so':
  dlopen(/Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libR.dylib
  Referenced from: /Library/Frameworks/R.framework/Versions/2.13/Resources/library/graph/libs/x86_64/BioC_graph.so
  Reason: image not found
Error: package/namespace load failed for 'flowCore'

> sessionInfo()
R version 2.13.0 Under development (unstable) (2011-03-13 r54760)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] en_CA.UTF-8/en_CA.UTF-8/C/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] rrcov_1.1-00     pcaPP_1.8-3      mvtnorm_0.9-96   robustbase_0.7-3 Biobase_2.11.10 

loaded via a namespace (and not attached):
[1] feature_1.2.6 ks_1.8.1      stats4_2.13.0 tools_2.13.0