[BioC] GLMs in DESeq (convergence problems)

[Seanna McTaggart]

Thank you Simon and Gordon for your replies.
The models are now converging with increased iterations in DESeq.
Gordon, thank you for pointing me towards the difference in the EdgeR 
GLM compared with that of DESeq.
We will also try running the models in EdgeR and see how the results 
differ from those of DESeq.

Cheers,

Seanna

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Seanna McTaggart
Centre for Immunity, Infection and Evolution
School of Biological Sciences
Ashworth Laboratories
University of Edinburgh
Edinburgh EH9 3JT
Scotland, UK

Tel +44 131 650 8682
Fax +44 131 650 6564
E-mail: smctagga at staffmail.ed.ac.uk

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