[BioC] Biocore Data Team : package mouse4302.db bug

Vojtech Kulvait kulvait at atlas.cz
Tue Mar 8 13:06:53 CET 2011


Hello,
I am getting wrong result from code: 

library("mouse4302.db")
s2p <- revmap(mouse4302SYMBOL);
contents(s2p["Zfpm1"])["Zfpm1"]

gives me empty list. But I know there should be 

1423603_at and 1451046_at (based on Ensembl, Netaffx).

I allready looked into databases mouse4302.sqlite and org.Mm.eg.sqlite and this gene is present in both of them so there is nothing to add. I cant figure out how exactly database connection work, so please correct this bug.

Thank you.
Vojtech Kulvait.



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