[BioC] Distance to Feature

[Zhu, Lihua (Julie)]

Sarah,

Yes, your assumption is correct.

Best regards,

Julie


On 3/1/11 1:50 PM, "Sarah Sheppard" <SarahSheppard at gmail.com> wrote:

> Hi Julie,
> 
> 
> 
> I thought when specifying "FeatureLocForDistance" as "end" and
> "PeakLocForDistance" as "end", that I would get the distance from the end of
> the peak (Rmost coord on the + strand, Lmost coord. on the - strand) to the
> end of the feature (e.g. transcript, since these are the coordinates I used in
> the annotation data) in "distance to feature". In the "distance to feature"
> output description, it says "distance to nearest feature, such as tss".
> 
> Am I incorrect in my assumption of what value is expressed in "distance to
> feature"?
> 
> Thanks,
> Sarah