[BioC] info on vennCounts function
Alberto Goldoni
alberto.goldoni1975 at gmail.com
Tue Jun 21 18:53:24 CEST 2011
Dear all,
i have a question on the "vennCounts" function.
Using this function on "results" value:
> vennCounts(results)
[hda+str]-[ref] [ref+str]-[ref] [hda+str]-[ref+str] Counts
[1,] 0 0 0 21496
[2,] 0 0 1 0
[3,] 0 1 0 12
[4,] 0 1 1 0
[5,] 1 0 0 32
[6,] 1 0 1 1
[7,] 1 1 0 34
[8,] 1 1 1 0
attr(,"class")
[1] "VennCounts"
what i shoul need is a way to understand which genes are in the [7,]
line from the "[hda+str]-[ref] vs [ref+str]-[ref]".
The only think i know is the number that should be 34, but i would
like to obtain a list of the 34 genes.
best regards.
> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] AnnotationDbi_1.14.1 Biobase_2.12.1 GenomicFeatures_1.4.2
[4] GenomicRanges_1.4.1 IRanges_1.10.0 limma_3.8.1
[7] biomaRt_2.8.0
loaded via a namespace (and not attached):
[1] Biostrings_2.20.0 BSgenome_1.20.0 DBI_0.2-5 RCurl_1.5-0
[5] RSQLite_0.9-4 rtracklayer_1.12.3 tools_2.13.0 XML_3.2-0
--
-----------------------------------------------------
Dr. Alberto Goldoni
Parma, Italy
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