[BioC] Working with Agilent 4X44k array,two color experiment

[Sean Davis]

On Tue, Jun 21, 2011 at 6:28 AM, Srikanth Manda Srinivas
<srikanth at ibioinformatics.org> wrote:
> Hi Everyone,
>
> I would like to know if we have specific package to work with Agilent 4X44k
> array just like Affy. Please guide me how one go for generating HeatMaps and
> other analysis on this data. I am a newbie in this area.

Take a look at the Agi4x44Preprocess package.  If you are new to
microarray data analysis using bioconductor, take a look at the limma
package and its documentation, particularly the user guide.

Sean