[BioC] DNAcopy dev version installation problem

[Martin Morgan]

On 06/01/2011 12:26 PM, Zhu, Lihua (Julie) wrote:
> Dear Venkatraman,
>
> I encountered the following problems when tried to install the DNAcopy
> package 1.27.0 at
> http://bioconductor.org/packages/2.9/bioc/html/DNAcopy.html.
>
> Although R CMD install went ok for MacOS 10.5 (Leopard) binary,
> library(DNAcopy) produced the following error.
>
> library(DNAcopy)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>    unable to load shared object
> '/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy/lib
> s/i386/DNAcopy.so':
>
> dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAco
> py/libs/i386/DNAcopy.so, 6): Library not loaded:
> /Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libR.dylib
>    Referenced from:
> /Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy/libs
> /i386/DNAcopy.so
>    Reason: image not found
> In addition: Warning message:
> In install.packages(c("DNAcopy"), lib =
> "/Library/Frameworks/R.framework/Resources/library/",  :
>    installation of package ŒDNAcopy¹ had non-zero exit status
> Error: package/namespace load failed for ŒDNAcopy¹
>
> Here is the error message if I tried to install from the package source.
>
>   R CMD install DNAcopy_1.27.0.tar
> * installing to library
> Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library¹
> * installing *source* package ŒDNAcopy¹ ...
> ** libs
> *** arch - i386
> gfortran-4.2 -arch i386   -fPIC  -g -O2 -c cbsWtstats.f -o cbsWtstats.o
> make: gfortran-4.2: Command not found
> make: *** [cbsWtstats.o] Error 127
> ERROR: compilation failed for package ŒDNAcopy¹

I think you're missing the gfortran component of the compiler tools; 
maybe a mac whiz can contribute to why the binary package installation 
fails; maybe a related issue.

http://r.research.att.com/tools/

Martin
> * removing
> Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy¹
> * restoring previous
> Œ/Library/Frameworks/R.framework/Versions/2.14/Resources/library/DNAcopy¹
>
> Could you please help? Thanks!
>
> Best regards,
>
> Julie
>
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