[BioC] chippeakanno related

[Zhu, Lihua (Julie)]

Deepak,

Jianhong is working on adding gene symbol and other IDs to the annotated
peaks. We will keep you updated.

Meanwhile, you could use getBM function in biomaRt to get gene symbols.
Thanks!

Best regards,

Julie 


On 7/28/11 9:50 AM, "Deepak Grover.CTR" <Deepak.Grover.CTR at usuhs.mil> wrote:

> Dear Ms. Zhu,
> 
> I am a researcher working on mouse chip-seq at USUHS, bethesda. I am trying to
> employ your bioconductor package for the annotation. I am getting gene IDs in
> ensembl format using TSS.mouse.NCBIM37, however I am looking to do the same to
> get back gene symbols(HUGP/hgnc). Can you suggest if there is a quickfix for
> this.
> I was trying convert bed format data for mouse gene annotation using
> "BED2RangedData" but so far did not succeed as that is giving me duplicate row
> name error.
> 
> I will really appreciate if you can suggest an easy fix to my problem.
> 
> Best,
> 
> 
> 
> Deepak Grover, Ph.D.
> Scientist
> Department of Anatomy, Physiology & Genetics
> Uniformed Services University of the Health Sciences
> Room C-2070
> 4301 Jones Bridge Rd Bethesda, MD 20814
> 301-295-3817
> Deepak.Grover.CTR at usuhs.mil
> http://www.usuhs.mil/
>  
> 
> 
> 
> Classification:  UNCLASSIFIED
> Caveats: None
> 
> 
> 
> Classification:  UNCLASSIFIED
> 
> Caveats: None
> 
> 
>