[BioC] Randomisation / resampling and multiple corrections

[Wolfgang Huber]

Il Jul/22/11 5:31 PM, MacDonald, James ha scritto:
> Hi January,
>
> The siggenes and samr packages both estimate false discovery via
> randomization.

January,

Also have a look at mt.maxT and mt.minP in the multtest package, and 
perhaps the function 'permax' in the equinymous package.

	Best wishes
	Wolfgang

>
> Best,
>
> Jim
>
>
>
> On 7/22/11 8:10 AM, January Weiner wrote:
>> Dear all,
>>
>> randomisation or resampling is viewed by some as an alternative to
>> correction for multiple testing such as Bonferroni or Holm.
>>
>> Is there any package implementing such an approach in microarray
>> analysis?
>>
>> Cheers,
>>
>> j.
>>
>


-- 


Wolfgang Huber
EMBL
http://www.embl.de/research/units/genome_biology/huber