[BioC] R package for DGE analysis between multiple RNA-Seq samples

[Davis McCarthy]

Hi Bruno

EdgeR has had GLM methods for many months now. These can be used to
perform ANOVA-like analyses (analysis of deviance in GLMs) and can handle
any experimental design that can be written as a linear model. The edgeR
Users Manual has a worked example of an analysis of a paired design, which
is a good place to start.

Cheers
Davis


> Dear all,
>
> Have you already known about a RNA-seq R Package for the differential
> expression analysis between multiple samples (ANOVA-like) ?
> Tools such as edgeR or DESeq seems to be limited to the analysis between
> two conditions only.
>
> thanks
>
> Bruno
>
> --
>
> Bruno Zeitouni, PhD
> Institut Curie - U900 INSERM - Mines ParisTech
> Equipe Bioinformatique
> Bâtiment de Biologie du Développement
> 26 rue d'ULM
> 75248 Paris Cedex 05 - FRANCE
>
> Tél  : +33 1 56 24 69 31
> Mail : bruno.zeitouni at curie.fr
>
>
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>
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--------------------------------------------------
Davis J McCarthy
Research Technician
Bioinformatics Division
Walter and Eliza Hall Institute of Medical Research
1G Royal Parade, Parkville, Vic 3052, Australia.
dmccarthy at wehi.edu.au
http://www.wehi.edu.au


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