[BioC] R: organism abbreviations (SPIA package)

Manca Marco (PATH) m.manca at maastrichtuniversity.nl
Tue Aug 23 21:32:01 CEST 2011

Dear Jing,

please take a look at this page:


Hope it helps,

Marco Manca, MD
University of Maastricht
Faculty of Health, Medicine and Life Sciences (FHML)
Cardiovascular Research Institute (CARIM)

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Da: bioconductor-bounces at r-project.org [bioconductor-bounces at r-project.org] per conto di Jing Huang [huangji at ohsu.edu]
Inviato: martedì 23 agosto 2011 20.44
A: 'bioconductor at r-project.org'
Oggetto: [BioC] organism abbreviations (SPIA package)

Dear All members,

I am analyzing a mouse microarray data by using SPIA package. At the end, I need to input an organism name so the package can recognize it.


“hsa” represent human sample. I am not sure what should I input in for mouse sample.
There is a table listed on this website: http://bioinformaticsprb.med.wayne.edu/SPIA

I don’t understand these abbreviation. Can somebody help me on this?

Many Thanks



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