[BioC] a question for SPIA package

[Sean Davis]

Hi, Jing.

You might try using an Illumina annotation package such as:

http://bioconductor.org/packages/release/data/annotation/html/illuminaHumanv1.db.html

Sean

On Mon, Aug 22, 2011 at 3:19 PM, Jing Huang <huangji at ohsu.edu> wrote:
> Dear Adi and other members,
>
> In order to generate a de=tgl$logFC and all=x$ENTREZ for SPIA application, one needs to use package hgu133plus2.db to get ENTREZID. My data was generated by  GPL2507<http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL2507>: Sentrix Human-6 Expression BeadChip, which is from Illumina Inc.
>
> What annotation package I should use? Can I still use hgu133plus2.db?
>
> Many thanks
>
> Jing
>
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