[BioC] How to output Normalised count data from DESeq?
whuber at embl.de
Wed Aug 17 12:08:11 CEST 2011
you can use
For more info, have a look at the manual page of the 'counts' accessor
Aug/17/11 9:25 AM, Andreia Fonseca scripsit::
> Hi Fabrice,
> when you use DESeq after normalizing you get the size factors. I think that
> if you divide your count data by the size factor you get the normalized
> Kind regards,
> On Wed, Aug 17, 2011 at 12:29 AM, Fabrice Tourre<fabrice.ciup at gmail.com>wrote:
>> Dear list,
>> I have got the raw counts for each exon using HTSeq-count.
>> I want to use DESeq to normalise the counts. How can I output the
>> Normalised count data from DESeq?
>> Thank you
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