[BioC] R: problem with the KEGGSOAP package

Manca Marco (PATH) m.manca at maastrichtuniversity.nl
Tue Aug 9 15:30:53 CEST 2011

Dear Naha,

I suppose it has to do with this announcement:

from which I extract the information most relevant to your query:
"Starting on July 1, 2011 the KEGG FTP site for academic users will be transferred from GenomeNet at Kyoto University to NPO Bioinformatics Japan, and it will be available only to paid subscribers."

All the best, Marco

Marco Manca, MD
University of Maastricht
Faculty of Health, Medicine and Life Sciences (FHML)
Cardiovascular Research Institute (CARIM)

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Da: bioconductor-bounces at r-project.org [bioconductor-bounces at r-project.org] per conto di Naharajan Lakshmanaperumal [lakshman at mpi-cbg.de]
Inviato: martedì 9 agosto 2011 15.28
A: bioconductor at r-project.org
Oggetto: [BioC] problem with the KEGGSOAP package


I was trying to retrieve pathway information for genes in Mycobacterium tuberculosis. But I get no pathway information, if try to query it by gene-id.

pathways <- try(get.pathways.by.genes(c("mtu:Rv2702")))

Anybody has an idea why this happens?

Thanks in advance,

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