[BioC] Where is DEXSeq bioconductor package?
anders at embl.de
Thu Aug 4 17:47:14 CEST 2011
On 08/04/2011 05:41 PM, Fabrice Tourre wrote:
> When I run python script dexseq_count.py in DEXseq. I have these error.
> UserWarning: Malformed SAM line: MRNM != '*' although flag bit&0x0008
You can ignore a warning. It is due to a strange way how 'bwa'
interprets the SAM format.
> counts[ '_loqaqual' ] += 1
> KeyError: '_loqaqual'
This looks like a typo; should read '_lowaqual'. I've corrected it in
SVN. Strange that it hasn't caused trouble before; maybe I introduced
the typo recently.
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