[BioC] Where is DEXSeq bioconductor package?

[Sean Davis]

Hi.  As Simon and I pointed out, you will need to run R-devel to
access DEXseq.  Also, the install procedure for bioconductor packages
is detailed on the website, but it is basically:

source("http://bioconductor.org/biocLite.R")
biocLite('DEXseq')

If after updating R and following the above instructions you still
have problems, write back to the list.

Sean


On Thu, Aug 4, 2011 at 8:26 AM, Jinyan Huang <jhuang.ceph at gmail.com> wrote:
> When I download and install, I got this error.
>
> R CMD INSTALL  DEXSeq_0.1.12.tar.gz
> * installing to library '~/R/x86_64-pc-linux-gnu-library/2.12'
> ERROR: dependency 'stringr' is not available for package 'DEXSeq'
> * removing '~/R/x86_64-pc-linux-gnu-library/2.12/DEXSeq'
>
> sessionInfo()
> R version 2.12.1 (2010-12-16)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
> [1] C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_2.12.1
>
> On Mon, Jul 25, 2011 at 4:17 PM, Simon Anders <anders at embl.de> wrote:
>> Hi
>>
>> Just to clarify: As indicated by the fact that it is available in the devel
>> branch only and not in release branch, DEXSeq is not yet released, and it
>> has not yet gone through the official Bioconductor peer review process
>> required for inclusion in the release.
>>
>> DEXSeq is more or less finished even though we are still busy with some
>> polishing and testing. If you want to try out the current beta version, go
>> ahead, but please be aware that there might still be a few rough corners.
>> Any feed-back is most welcome, of course.
>>
>>  Simon
>>
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>
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