[BioC] Where is DEXSeq bioconductor package?
sdavis2 at mail.nih.gov
Thu Aug 4 14:38:02 CEST 2011
Hi. As Simon and I pointed out, you will need to run R-devel to
access DEXseq. Also, the install procedure for bioconductor packages
is detailed on the website, but it is basically:
If after updating R and following the above instructions you still
have problems, write back to the list.
On Thu, Aug 4, 2011 at 8:26 AM, Jinyan Huang <jhuang.ceph at gmail.com> wrote:
> When I download and install, I got this error.
> R CMD INSTALL DEXSeq_0.1.12.tar.gz
> * installing to library '~/R/x86_64-pc-linux-gnu-library/2.12'
> ERROR: dependency 'stringr' is not available for package 'DEXSeq'
> * removing '~/R/x86_64-pc-linux-gnu-library/2.12/DEXSeq'
> R version 2.12.1 (2010-12-16)
> Platform: x86_64-pc-linux-gnu (64-bit)
>  C
> attached base packages:
>  stats graphics grDevices utils datasets methods base
> loaded via a namespace (and not attached):
>  tools_2.12.1
> On Mon, Jul 25, 2011 at 4:17 PM, Simon Anders <anders at embl.de> wrote:
>> Just to clarify: As indicated by the fact that it is available in the devel
>> branch only and not in release branch, DEXSeq is not yet released, and it
>> has not yet gone through the official Bioconductor peer review process
>> required for inclusion in the release.
>> DEXSeq is more or less finished even though we are still busy with some
>> polishing and testing. If you want to try out the current beta version, go
>> ahead, but please be aware that there might still be a few rough corners.
>> Any feed-back is most welcome, of course.
>> Bioconductor mailing list
>> Bioconductor at r-project.org
>> Search the archives:
> Bioconductor mailing list
> Bioconductor at r-project.org
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
More information about the Bioconductor