[BioC] Create an non-mainstream organism-specific database for ChIP-chip analysis

[Marc Carlson]

Hi Olivier,

This can be done, but it is not trivial because it involves creating an 
org database (see the sqlite file inside of any of the org packages) 
from a reliable resource.  If this sounds like something that you would 
be up for, please contact me and I can assist.

   Marc


On 04/24/2011 06:04 PM, Olivier Lucas wrote:
> Hi all,
>
> I would like to create the equivalent of org.Hs.eg.db for my organism of
> interest, Toxoplasma gondii.  Could anyone point me toward the right direction.
> Is it just a query to NCBI with GeneID?
> This is to use the ChipPeakAnno package for ChIP-chip analysis of a
> non-mainstream organism. Do you think that is too much trouble, knowing it is
> not in Biomart?
>
> Thanks!
>
> Olivier
>
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>
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