[BioC] ENVISIONQuery package

[Alex Lisovich]

Hi Yot,

The package accepts only Uniprot Accession IDs.

Thanks,

Alex

On Tue, Apr 12, 2011 at 10:08 AM, yotsawat pomyen <yotsa at yahoo.com> wrote:
> Thank you Alex for the reply.
>
> I have another question: Can the package use Uniprot ID that is in the format
> like this "XXX_HUMAN"?
>
> Best
>
> Yot
>
>
>
> ----- Original Message ----
> From: Alex Lisovich <alex.lisovich at gmail.com>
> To: yotsawat pomyen <yotsa at yahoo.com>
> Cc: bioconductor at r-project.org; "Day, Roger S" <day01 at pitt.edu>
> Sent: Tue, April 12, 2011 2:29:35 PM
> Subject: Re: [BioC] ENVISIONQuery package
>
> Hi Yot,
>
> The package manual says that Uniprot2Affy service is temporary
> unavailable from EnFin Encore (you can check yourself their front end
> at http://www.ebi.ac.uk/enfin-srv/envision/result.html )  When we
> contacted the Enfin Encore team with similar question, they was that
> at the moment they are overwhelmed with another tasks. You can contact
> them directly and ask to activate the service ASAP. Hope this helps.
>
> Thanks,
>
> Alex Lisovich
>
> On Tue, Apr 12, 2011 at 7:10 AM, yotsawat pomyen <yotsa at yahoo.com> wrote:
>> Hi All,
>>
>> ENVISIONQuery package has just been online at the beginning of this week. I
>> tried the examples that the authors provided in the vignette and they worked
>> fine. The problem is that when I tried to switch from Affy2Uniprot (the worked
>> example) to Uniprot2Affy, it didn't work. I was using the same Uniprot ID from
>> the results that the package feed back to me from the worked example, assuming
>> that they must be compatible. Is anyone try this package out yet and if so how
>> do I get it to work?
>>
>> Thanks
>>
>> Yot
>>
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>
>