[BioC] siggenes sam2excel Error

[Holger Schwender]

Hi Joseph,

I have just tested sam2excel against several situations which might cause this error. But it works perfectly for me. So without seeing your R code and your data, I actually have no idea why you get this error.

Best,
Holger


-------- Original-Nachricht --------
> Datum: Tue, 5 Apr 2011 08:47:37 -0700 (PDT)
> Von: joseph <jdsandjd at yahoo.com>
> An: bioconductor at r-project.org
> Betreff: [BioC] siggenes sam2excel Error

> Hi
> I get an error when I use sam2excel to export sam output:
> > sam2excel(sam.out, 0.1, file="sam.out.csv", n.digits = 2, what = "both",
> quote 
> >= FALSE, entrez = FALSE)
> Error in if (all(rownames(mat.sig) != as.character(1:nrow(mat.sig))))
> mat.sig <- 
> data.frame(mat.sig,  : 
> 
>   missing value where TRUE/FALSE needed
> 
> The gene.names in my data are not annotated genes; they are genomic
> locations 
> (chr2_128148639_128149977,  chr2_128175315_128176406 …)
>  Thank you for your help
> Joseph
> 
> 
> > sessionInfo()
> R version 2.12.1 RC (2010-12-10 r53825)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
> 
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
> 
> attached base packages:
> [1] splines   stats     graphics  grDevices utils     datasets  methods   
> base     
> 
> 
> other attached packages:
> [1] siggenes_1.24.0 multtest_2.6.0  Biobase_2.10.0  sparcl_1.0.1   
> 
> loaded via a namespace (and not attached):
> [1] cluster_1.13.2    compHclust_1.0-1  fastcluster_1.0.4 flashClust_1.01 
>  
> MASS_7.3-9        survival_2.36-2   tools_2.12.1     
> 
> > 
> 
> 	[[alternative HTML version deleted]]
> 

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