[BioC] Compatibility of Biorad cfx files to HTqPCR?

[Hooiveld, Guido]

Hi Heidi,
We recently got access to a BioRad CFX96 and CFX384 machine.  I haven't used your HTqPCR package yet (we are still using a combination of  BioRad's CFX software & Excel....) In other words, you can count me in for import functionality for these types of files. If needed, i can provide you with sample files from both the 96 and 384-well system.

Regards,
Guido

--------------------------------------------------------- 
Guido Hooiveld, PhD 
Nutrition, Metabolism & Genomics Group 
Division of Human Nutrition 
Wageningen University 
Biotechnion, Bomenweg 2 
NL-6703 HD Wageningen 
the Netherlands 
tel: (+)31 317 485788 
fax: (+)31 317 483342 
email:      guido.hooiveld at wur.nl
internet:   http://nutrigene.4t.com 
http://www.researcherid.com/rid/F-4912-2010


-----Original Message-----
From: bioconductor-bounces at r-project.org [mailto:bioconductor-bounces at r-project.org] On Behalf Of Heidi Dvinge
Sent: Sunday, April 03, 2011 15:59
To: TP Sahoo
Cc: bioconductor at r-project.org
Subject: Re: [BioC] Compatibility of Biorad cfx files to HTqPCR?

Hi Tarini,

I'm afraid that at the moment your only option is exporting your results to a tab delimited txt file.

If there's a demand for it, it would be possible for me to add import functionality for cfx or other file formats to HTqPCR. I just haven't come across any of those files myself yet.

Best
\Heidi

> Hello everybody,
>
> I'm new to using R for qpcr data analyses. The machine I use is a 
> BioRad cfx96, so I need some help with data import for HTqPCR. I 
> understand .sds files from ABI is compatible for import.
> So,besides modifying the cfx to excel to txt file, what options do I have?
> I hope someone using a biorad qpcr may help me.
>
>   Thanks,
>   Tarini Sahoo
>
>   --
>   Dept of Biological and Environmental Sciences
>   University of Jyväskylä, Finland. FI-40500
>
>
>
>
>
>
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>
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