[BioC] EBImage installs but won't load on Mac OS 10.6.4

Tue Nov 30 18:25:42 CET 2010

Finally, after a lot of brainstorming, (mostly) fixed Turned out to be a 
permissions issue: because I installed EBImage as root, group and other 
execute permissions were not set.

Tried:

chmod -R a+rx /Library/Frameworks/R.framework/Resources/library/EBImage
chmod -R g+w /Library/Frameworks/R.framework/Resources/library/EBImage

and now no problem loading from R invoked in an X11 or Terminal window, 
though R64.app still hangs on:

library(EBImage)

Do I still have some permissions wrong?

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Thanks for the help,

Walton

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# Walton A. Green
# E-mail: $ echo wagreenXbricol.net | tr 'X' '@'
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On Fri, 15 Oct 2010, Michael Dondrup wrote:

> Hi Walton,
>
> you are using MacPorts, right? Possibly you unintentionally installed another R as a dependency through MacPorts. I had the same effect. That MacPorts R will be
> $ which R
> /opt/local/bin/R
> and will become your default R on the console  (if you just type 'R') then, but the packages you install through the GUI don't go there, the  package installs are distinct. The cran Mac R is
> normally in  /usr/bin/R
> try to find our where the package is installed.
>
> Hope that helps
> Michael
>
> Am Oct 15, 2010 um 3:10 PM schrieb Gregoire Pau:
>
>> Hello Walton,
>>
>> EBImage works fine on Mac systems. It seems that you're facing a problem caused by the concurrent installation of different versions of R and/or of different architecture (32-bit and 64-bit), unrelated to EBImage.
>>
>> From your R CMD INSTALL output, it appears that you installed the 64-bit version of EBImage, see:
>> "installing to /Library/Frameworks/R.framework/Resources/library/EBImage/libs/x86_64"
>>
>> What is your version of R, when started from the command line ? Did you try to start R and load EBImage from the command line ? Did it work ? Did you try to start R64.app and load EBImage ?
>>
>> The warning message 'Xlib: extension "RANDR" missing on display ":0.0"' is caused by the MacPort version of GTK+. I don't know why it pops up but it seems harmless.
>>
>> Hope this helps,
>>
>> Greg
>> ---
>> Gregoire Pau
>> EMBL Research officer
>> http://www.embl.de/~gpau/
>>
>> On 14/10/2010 07:50, W. A. Green wrote:
>>>
>>> Probably this is a question for Gregoire Pau, but I know there have been
>>> others who had trouble installing EBImage on Snow Leopard....Haven't
>>> found a fix for my problem on BioC or R-sig-mac lists, though.
>>>
>>> On:
>>>
>>> platform x86_64-apple-darwin9.8.0
>>> arch x86_64
>>> os darwin9.8.0
>>> system x86_64, darwin9.8.0
>>> status
>>> major 2
>>> minor 11.1
>>> year 2010
>>> month 05
>>> day 31
>>> svn rev 52157
>>> language R
>>> version.string R version 2.11.1 (2010-05-31)
>>>
>>> The source installation seems to run fine (see output below), but
>>>
>>>> library(EBImage)
>>>
>>> gives:
>>>
>>> Error in library(EBImage) : there is no package called 'EBImage'
>>>
>>> The only error in the install process seems to be:
>>>
>>> Xlib: extension "RANDR" missing on display ":0.0".
>>>
>>> which doesn't seems to prevent gtk-demo from opening an X window and
>>> running fine.
>>>
>>> bash-3.2$ gtk-demo
>>> Xlib: extension "RANDR" missing on display ":0.0".
>>> bash-3.2$ convert -version
>>> Version: ImageMagick 6.5.8-4 2009-12-15 Q16 http://www.imagemagick.org
>>> Copyright: Copyright (C) 1999-2009 ImageMagick Studio LLC
>>> Features:
>>>
>>> bash-3.2$ pkg-config gtk+-2.0 --libs
>>> -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0
>>> -lpangocairo-1.0 -lXinerama -lXi -lXrandr -lXcursor -lXcomposite
>>> -lXdamage -lpangoft2-1.0 -lgio-2.0 -lXext -lXfixes -lcairo -lpixman-1
>>> -lpng12 -lXrender -lX11 -lXau -lXdmcp -lpango-1.0 -lm -lfontconfig
>>> -lexpat -lfreetype -lz -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0
>>> -lglib-2.0 -lintl -liconv
>>> bash-3.2$ Magick-config --libs
>>> -L/opt/local/lib -lMagickCore -llcms -ltiff -lfreetype -ljpeg
>>> -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz -liconv -lXext -lSM
>>> -lICE -lX11 -lXt -lbz2 -lz -lm -lgomp -lclparser -Wl,-framework,OpenCL
>>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>>> -lpthread -lltdl
>>>
>>> I've also tried local source installs from the mac gui in both R and R64
>>> and install.packages() from within R....Nothing seems to work.
>>>
>>> Any guidance would be much appreciated,
>>>
>>> Walton
>>>
>>> Here's the install output:
>>>
>>> bash-3.2$ sudo R CMD INSTALL EBImage_3.5.5.tar.gz
>>> * installing to library
>>> â??/Library/Frameworks/R.framework/Resources/libraryâ??
>>> * installing *source* package â??EBImageâ?? ...
>>> checking for Magick-config... yes
>>> * found ImageMagick version 6.6.3 Q16
>>> * found ImageMagick includes in -I/opt/local/include/ImageMagick
>>> checking for pkg-config... yes
>>> * compiling with GTK+ support
>>> -----------------------------------------------------
>>> configure: creating ./config.status
>>> config.status: creating src/Makevars
>>> ** libs
>>> *** arch - x86_64
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c EBImage.c -o EBImage.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c conversions.c -o conversions.o
>>> conversions.c: In function â??magick2SEXPâ??:
>>> conversions.c:148: warning: â??DispatchImageâ?? is deprecated (declared
>>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>>> conversions.c:153: warning: â??DispatchImageâ?? is deprecated (declared
>>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>>> conversions.c:155: warning: â??DispatchImageâ?? is deprecated (declared
>>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>>> conversions.c:157: warning: â??DispatchImageâ?? is deprecated (declared
>>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>>> conversions.c:162: warning: â??DispatchImageâ?? is deprecated (declared
>>> at /opt/local/include/ImageMagick/magick/deprecate.h:265)
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c display.c -o display.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c distmap.c -o distmap.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c drawable.c -o drawable.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c features_haralick.c -o features_haralick.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c features_hull.c -o features_hull.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c features_moments.c -o features_moments.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c features_zernike.c -o features_zernike.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c filters_magick.c -o filters_magick.o
>>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c floodFill.cpp -o
>>> floodFill.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c io.c -o io.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c morphology.c -o morphology.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c normalize.c -o normalize.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c objects.c -o objects.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c ocontour.c -o ocontour.o
>>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c propagate.cpp -o
>>> propagate.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c thresh.c -o thresh.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c tile.c -o tile.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c tools.c -o tools.o
>>> gcc -arch x86_64 -std=gnu99
>>> -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -DUSE_GTK -DGLIB_GETTEXT -D_REENTRANT
>>> -I/opt/local/include/gtk-2.0 -I/opt/local/lib/gtk-2.0/include
>>> -I/opt/local/include/atk-1.0 -I/opt/local/include/cairo
>>> -I/opt/local/include/pango-1.0 -I/opt/local/include/gio-unix-2.0/
>>> -I/opt/local/include -I/opt/local/include/glib-2.0
>>> -I/opt/local/lib/glib-2.0/include -I/opt/local/include/pixman-1
>>> -I/opt/local/include/freetype2 -I/opt/local/include/libpng12 -Wall
>>> -I/opt/local/include/ImageMagick -fopenmp -I/opt/local/include/ImageMagick
>>> -fPIC -g -O2 -c translate.c -o translate.o
>>> g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include
>>> -I/Library/Frameworks/R.framework/Resources/include/x86_64
>>> -I/usr/local/include -Wall -I/opt/local/include/ImageMagick -fopenmp
>>> -I/opt/local/include/ImageMagick -fPIC -g -O2 -c watershed.cpp -o
>>> watershed.o
>>> g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined
>>> dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib
>>> -o EBImage.so EBImage.o conversions.o display.o distmap.o drawable.o
>>> features_haralick.o features_hull.o features_moments.o features_zernike.o
>>> filters_magick.o floodFill.o io.o morphology.o normalize.o objects.o
>>> ocontour.o propagate.o thresh.o tile.o tools.o translate.o watershed.o
>>> -L/opt/local/lib -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0
>>> -lpangocairo-1.0 -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage
>>> -lpangoft2-1.0 -lgio-2.0 -lXext -lXfixes -lcairo -lpixman-1 -lpng12
>>> -lXrender -lX11 -lXau -lXdmcp -lpango-1.0 -lm -lfontconfig -lexpat
>>> -lfreetype -lz -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl
>>> -liconv -L/opt/local/lib -L/opt/local/lib -L/opt/local/lib
>>> -L/opt/local/lib -lMagickCore -llcms -ltiff -lfreetype -ljpeg
>>> -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz -liconv -lXext -lSM
>>> -lICE -lX11 -lXt -lbz2 -lz -lm -lclparser -Wl,-framework,OpenCL
>>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>>> -lpthread -lltdl -L/opt/local/lib -lMagickWand -lMagickCore -llcms -ltiff
>>> -lfreetype -ljpeg -L/opt/local/lib -lfontconfig -lexpat -lfreetype -lz
>>> -liconv -lXext -lSM -lICE -lX11 -lXt -lbz2 -lz -lm -lclparser
>>> -Wl,-framework,OpenCL
>>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries -lm
>>> -lpthread -lltdl -F/Library/Frameworks/R.framework/.. -framework R
>>> -Wl,-framework -Wl,CoreFoundation
>>> installing to
>>> /Library/Frameworks/R.framework/Resources/library/EBImage/libs/x86_64
>>> ** R
>>> ** inst
>>> ** preparing package for lazy loading
>>> ** help
>>> *** installing help indices
>>> ** building package indices ...
>>> ** testing if installed package can be loaded
>>> Xlib: extension "RANDR" missing on display ":0.0".
>>>
>>> * DONE (EBImage)
>>>
>>> ## .signature
>>> # Walton A. Green
>>> # E-mail: $ echo wagreenXbricol.net | tr 'X' '@'
>>> # URL: <http://www.bricol.net>
>>> # Phone: (203) 640-8122
>>> #################### 60 characters wide ####################
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>> Search the archives:
>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>
>> _______________________________________________
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>> https://stat.ethz.ch/mailman/listinfo/bioconductor
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