[BioC] pdInfobuilder - building custom cdf

[Ania Lorenc]

Hello,

I'm preparing a custom cdf for a custom SNP/CNV array. However,without 
success. Could someone suggest what might cause source  this error?

Thanks,

Ania Lorenc

Parsing file: MOUSEDIVm520650.CDF...
Getting SNP probes...
Organizing PM probes for SNPs...
Getting SNP information...
Organizing PM probes for CNVs...
Getting sequences for SNPs...
Getting sequences for CNVs...
Merging sequence information for SNPs...
Merging sequence information for CNVs...
Creating Biostrings objects...
Error in .charToXString(basetype, x, solved_SEW) : key 32 not in lookup 
table
Calls: makePdInfoPackage ... XStringSet -> .charToXStringSet -> 
.charToXString -> .Call
In addition: Warning messages:
1: In rm(cols, ok, colsOut, seq) : object 'ok' not found
2: In rm(cols, ok, colsOut, seq) : object 'ok' not found

sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

locale:
[1] C/UTF-8/C/C/C/C

attached base packages:
[1] stats     graphics  grDevices datasets  utils     methods   base

other attached packages:
  [1] pdInfoBuilder_1.14.1 oligo_1.14.0         oligoClasses_1.12.1
  [4] affxparser_1.22.0    RSQLite_0.9-3        DBI_0.2-5
  [7] Biobase_2.10.0       R.utils_1.5.7        R.oo_1.7.4
[10] R.methodsS3_1.2.1

loaded via a namespace (and not attached):
[1] Biostrings_2.18.0     IRanges_1.8.2         affyio_1.18.0
[4] preprocessCore_1.12.0 splines_2.12.0
 >

loaded via a namespace (and not attached):
[1] tools_2.12.0