[BioC] remapping probes

[Steve Lianoglou]

Hi,

On Fri, Nov 19, 2010 at 4:57 AM, Swapna Menon <swapna30 at gmail.com> wrote:
> Hi All!
>
> I am a beginner and am currently trying to formulate a BioC workflow for
> some affymetrix datasets (human, rat, mouse). I have been reading about
> probe remapping- have come across AffyProbeMiner, Cleaner and
> GATExplorer-does anyone have experience with these? Is remapping important
> even for the latest BioC versions-have the CDFs been redefined already?
> (How) does it affect choices of normalization/summarization algorithms?
>
> Thank you much...

Try poking around here first before you take on that burden:

http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact