[BioC] oneChannelGUI

Richard Friedman friedman at cancercenter.columbia.edu
Thu Nov 18 15:47:02 CET 2010

Dear Marcos,

	You have install the genefilter and Category packages.
I do not recall the Rgraphviz parts.

I hope that this helps somewhat,
Richard A. Friedman, PhD
Associate Research Scientist,
Biomedical Informatics Shared Resource
Herbert Irving Comprehensive Cancer Center (HICCC)
Department of Biomedical Informatics (DBMI)
Educational Coordinator,
Center for Computational Biology and Bioinformatics (C2B2)/
National Center for Multiscale Analysis of Genomic Networks (MAGNet)
Room 824
Irving Cancer Research Center
Columbia University
1130 St. Nicholas Ave
New York, NY 10032
(212)851-4765 (voice)
friedman at cancercenter.columbia.edu

"Did he win the Nobel prize or the Ig Nobel
prize for levitating the frog?".
Rose Friedman, age 14

On Nov 18, 2010, at 9:28 AM, Marcos Pinho wrote:

> Dear List,
> I have encontered some problems after following the instaltion  
> instructions
> for the oneChannelGui software
>> library(oneChannelGUI)
> Loading required package: Biobase
> Welcome to Bioconductor
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
> Loading required package: limma
> Loading required package: affylmGUI
> Loading required package: tcltk
> Loading Tcl/Tk interface ... done
> Loading required package: affy
> Loading required package: affyio
> ActiveTcl was found in the Windows Registry (for CURRENT_USER),  
> installed in
> C:\Tcl
> This directory will be added to the Tcl search path to enable  
> affylmGUI
> to find the Tktable and BWidget extensions.
> To begin, type affylmGUI() or use the pull-down menu.
> Searching for user-defined affylmGUI commands in
> C:/Users/mbpinho/Documents/R/win-library/2.12/affylmGUI/etc ...
> Loading required package: tkWidgets
> Loading required package: widgetTools
> Loading required package: DynDoc
> Loading required package: tools
> Loading required package: GOstats
> Loading required package: Category
> Loading required package: AnnotationDbi
> Error in loadNamespace(imp[[1L]], c(lib.loc, .libPaths())) :
>  there is no package called 'genefilter'
> Error: package 'Category' could not be loaded
> Could anybody shed some light to what possible mistakes that I made  
> during
> instalation? I followed the steps on the software developer page.
> Also could someone clarify on how to install the Rgraphviz for the
> oneChannelGUI. The instructions were not really clear to me.
> Regards,
> -- 
> Marcos B. Pinho
> Instituto Nacional de Câncer - INCA
> Rio de Janeiro - Brasil
> 	[[alternative HTML version deleted]]
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