[BioC] aroma.affymetrix package installation problem

Henrik Bengtsson hb at biostat.ucsf.edu
Mon Nov 15 18:04:34 CET 2010


Thank you for the report and the troubleshooting.
http://aroma-project.org/hbLite.R should now be there again (the poor
file got forgotten about when the web server was updated yesterday).

/Henrik
(aroma-project.org)

On Mon, Nov 15, 2010 at 5:32 AM, Sean Davis <sdavis2 at mail.nih.gov> wrote:
>
>
> On Mon, Nov 15, 2010 at 8:28 AM, René Dreos <talponer at gmail.com> wrote:
>>
>> Hi Yan,
>>
>> It seems to me that R is not able to open a connection. You should try
>> setting the variable:
>>
>> Sys.putenv("http_proxy" = "http://127.0.0.1:8228")
>>
>> the "http://127.0.0.1:8228" is the configuration for my mac, you should
>> check your system for the right proxy and port.
>>
>
> Actually, the error is because the file does not exist on the server, at
> least for me, and may not be because of a proxy issue.  The
> aroma-project.org maintainer may need to fix the issue on the server side.
> Sean
>
>>
>> best
>> r
>>
>> On 15 November 2010 12:19, Yan Jiao <y.jiao at ucl.ac.uk> wrote:
>>
>> > Hi bioconductor guru,
>> >
>> >
>> >
>> >
>> > I was trying to use aroma.affymetrix package on my windows machine, I'm
>> > using R 2.11.0, and I typed:
>> >
>> >
>> > source("http://aroma-project.org/hbLite.R")
>> >
>> >
>> >
>> > I got:
>> >
>> > Error in file(file, "r", encoding = encoding) :
>> >
>> >  cannot open the connection
>> >
>> > In addition: Warning message:
>> >
>> > In file(file, "r", encoding = encoding) :
>> >
>> >  cannot open: HTTP status was '404 Not Found'
>> >
>> >
>> >
>> > many thanks
>> >
>> >
>> >
>> > Yan
>> >
>> >
>> > **********************************************************************
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>> >
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