[BioC] help with affy st gene arrays

[YBao]

Thanks so much, Achilleas, for the quick response. I will try to use
those two packages and see how far I can go with them.

Yongde

On Thu, Nov 11, 2010 at 4:24 PM, Achilleas Pitsillides
<anp4r at virginia.edu> wrote:
> Hi Yongde,
>
> I am no expert but for the last  Human Gene 1.0 ST array data I analyzed I
> used the xps package for pre-processing and then to assess differential
> expression I used the limma package. I am sorry I don't have any screenshots
> but both packages have nice documentation in their vignettes, which should
> be really straight forward to follow.
>
> cheers,
> Achilleas
>
>
>
> On Thu, Nov 11, 2010 at 3:46 PM, YBao <yb8d at virginia.edu> wrote:
>>
>> Dear BioConductor experts,
>>
>>
>> I wonder if anyone would be generous enough to share some
>> scripts/screen images they use to analyze Affy ST gene arrays, either
>> for human or mouse. I am particularly interested in learning what
>> packages they use and what the output files look like.
>>
>> Thanks much,
>>
>>
>>
>> Yongde
>>
>> Dept. Microbiology
>> University of Virginia
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives:
>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>