[BioC] SAM results

Michal Blazejczyk michal.blazejczyk at mail.mcgill.ca
Wed Nov 10 19:25:27 CET 2010

Dear List,

I have a question regarding p-values, d-values and q-values returned
by Bioconductor's SAM method (siggenes package).

 - My understanding is that the p-values returned are unadjusted.
   Does it make sense to apply standard FDR procedres (e.g. Benjamini-
   Hochberg) to them?

 - What is the definition of d-values and q-values?

Michal Blazejczyk

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