[BioC] one problem about IRanges Package

Vincent Carey stvjc at channing.harvard.edu
Tue Nov 9 12:43:11 CET 2010


Dr Zongfu:

It will be easier to help you if you will use updated resources.
Please install R 2.12, the current version, and then use biocLite() to
install the packages you need.  After this if you find an error,
please send all details to the list.  I personally maintain a 64 bit
windows 7 (not XP) machine so may not be able to reproduce your
situation well.  It would be advisable to use windows 7 if available.

On Mon, Nov 8, 2010 at 11:56 PM, cao zongfu <caozongfu at gmail.com> wrote:
> Dear Prof. , Hi
>
>       I am a R user from National Engineering Research Center for
> Beijing Biochip Technology  of China. Recently, I used simpleaffy
> package to perform quality control of Affymetrix expression profile
> chip. I met one problem:
>
>       I found that simpleaffy can not work under R2.11.1-X64 on my
> computer. As we known, IRanges was used in the simpleaffy package. I
> used R2.11.1-X64 under 64-bit Windows XP. I found that IRanges 1.8.2
> can not work.When I used library(IRanges) command, the error said:
> package "Iranges" is not install for the 'arch=x64'. But I have
> install the IRanges into the R in deed. I want to know  whether the
> simpleaffy can only work under the R32. If I hope to used the R64 in
> order to increasing the efficiency, Would you please help me how to
> deal with?Thank you in advance.
>
>
> R version 2.11.1 (2010-05-31)
> x86_64-pc-mingw32
>
> locale:
> [1] LC_COLLATE=Chinese_People's Republic of China.936
> LC_CTYPE=Chinese_People's Republic of China.936
> [3] LC_MONETARY=Chinese_People's Republic of China.936 LC_NUMERIC=C
> [5] LC_TIME=Chinese_People's Republic of China.936
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] genefilter_1.30.0 affy_1.26.1       Biobase_2.8.0
>
> loaded via a namespace (and not attached):
>  [1] affyio_1.16.0         annotate_1.28.0       AnnotationDbi_1.12.0
> DBI_0.2-5             preprocessCore_1.10.0
>  [6] RSQLite_0.9-2         splines_2.11.1        survival_2.35-8
> tools_2.11.1          xtable_1.5-6
>>        library(IRanges)
> error: Package "Iranges" is not install for the 'arch=x64'.
>
>
>
>
>
>
>
> Zongfu Cao
>
> National Engineering Research Center for Beijing Biochip Technology  of China
>
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