[BioC] Removing raw probes in affy data

[Hooiveld, Guido]

Hi Michal,

I found this thread and links mentioned very useful:
http://thread.gmane.org/gmane.science.biology.informatics.conductor/30710

Regards,
Guido

------------------------------------------------ 
Guido Hooiveld, PhD 
Nutrition, Metabolism & Genomics Group
Division of Human Nutrition 
Wageningen University 
Biotechnion, Bomenweg 2 
NL-6703 HD Wageningen 
the Netherlands 
tel: (+)31 317 485788 
fax: (+)31 317 483342 
internet:   http://nutrigene.4t.com
email:      guido.hooiveld at wur.nl



> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch 
> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of 
> Michal Blazejczyk
> Sent: Friday, November 05, 2010 15:20
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] Removing raw probes in affy data
> 
> Hello everyone,
> 
> Is it possible to remove certain probes before normalizing 
> Affymetrix data?  I have a client who is worried about 
> cross-hybridization in one of his genes of interest, and he 
> would like to remove the probes that are causing this.
> 
> Best regards,
> 
> Michal Blazejczyk
> FlexArray Lead Developer
> McGill University and Genome Quebec Innovation Centre
> 
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