[BioC] Rsamtools from biocLite using R-devel

[Kasper Daniel Hansen]

This issue is still not resolved as of today (8:25 EST).

Kasper

On Fri, Oct 29, 2010 at 3:40 PM,  <dtenenba at fhcrc.org> wrote:
>
>
> Quoting Kasper Daniel Hansen <kasperdanielhansen at gmail.com>:
>
>> Right now, I still get Rsamtools 1.1.17 when I use biocLite, which
>> indicates that either the problem has not been fixed or the solution
>> has not propagated to the tarballs.
>>
>> BioC_mirror = http://www.bioconductor.org
>> Change using chooseBioCmirror().
>> Using R version 2.13.0 (R-devel), biocinstall version 2.8.1.
>> Installing Bioconductor version 2.8 packages:
>> [1] "Rsamtools"
>> Please wait...
>>
>> trying URL
>>  'http://www.bioconductor.org/packages/2.8/bioc/src/contrib/Rsamtools_1.1.17.tar.gz'
>> Content type 'application/x-gzip' length 1862549 bytes (1.8 Mb)
>> opened URL
>> =======
>>
>>
>
>
>
> Hi Kasper,
>
> This is because a failing unit test was causing the package to not propagate
> to our website.
> This has been fixed and the new package will appear by midnight (Pacific
> time) tonight.
>
> If you need it before then, you can check it out from svn and build it on
> your machine.
>
> Sorry for the inconvenience.
> Thanks
> Dan
>
>
>