[BioC] Aligned RNA-seq data to ranked list of genes

[L. Mohammadi]

My other question is how I can get a bioconductor account.
I tried but I couldn't do it.
thanks
Leila


> One possibility is Genominator which uses an SQLite backend for
> storing the data and does require a bit of time in setting up the
> data, but you can also do a pipeline entirely in R using
> IRanges/GenomicRanges and ShortRead.
>
> Kasper
>
> On Tue, May 25, 2010 at 11:22 AM,  <paulig2001 at yahoo.co.uk> wrote:
>> Hello,
>>
>> I've got aligned rna-seq data (aligned using MAQ) for a sample and want
>> to turn it into a list of genes ranked by their expression level in that
>> sample. I'm wondering if anybody can point me towards a tutorial or a
>> package that would allow me to do this?
>>
>> Thanks a bunch.
>>
>> Paul
>>
>>
>>
>>
>>        [[alternative HTML version deleted]]
>>
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>
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