[BioC] Aligned RNA-seq data to ranked list of genes

[Kasper Daniel Hansen]

One possibility is Genominator which uses an SQLite backend for
storing the data and does require a bit of time in setting up the
data, but you can also do a pipeline entirely in R using
IRanges/GenomicRanges and ShortRead.

Kasper

On Tue, May 25, 2010 at 11:22 AM,  <paulig2001 at yahoo.co.uk> wrote:
> Hello,
>
> I've got aligned rna-seq data (aligned using MAQ) for a sample and want to turn it into a list of genes ranked by their expression level in that sample. I'm wondering if anybody can point me towards a tutorial or a package that would allow me to do this?
>
> Thanks a bunch.
>
> Paul
>
>
>
>
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