[BioC] Problem with createAnnObjs.HUMANCHIP_DB

Wendelin Waunzel waunzel at web.de
Tue May 25 13:45:04 CEST 2010


   Hello,
   Being keen on the RmiR package I tried to install the corresponding data set
   (hgug4112a.db_2.2.5), but failed with the following error code. I did a
   complete update of my R/Bioconductor environment as recommended in other
   postings, but this step didn't solve my problems. I have a fresh  2.11.0.
   All necessary packages were installed in advance:
   DBI_0.2-5.tar.gz
   RSQLite_0.9-0.tar.gz
   AnnotationDbi_1.10.1.tar.gz
   hgug4112a.db_2.2.5.tar.gz
   RSVGTipsDevice_1.0-1.tar.gz
   RmiR.Hs.miRNA_1.0.6.tar.gz
   RmiR_1.4.0.tar.gz
   hgug4112a.db_2.2.5.tar.gz
   Here is the R complaint
   #######################
   * installing *source* package 'hgug4112a.db' ...
   ** R
   ** inst
   ** preparing package for lazy loading
   Loading required package: Biobase
   Welcome to Bioconductor
     Vignettes contain introductory material. To view, type
     'openVignette()'. To cite Bioconductor, see
     'citation("Biobase")' and for packages 'citation(pkgname)'.
   ** help
   *** installing help indices
   ** building package indices ...
   ** testing if installed package can be loaded
   Error : .onLoad failed in loadNamespace() for 'hgug4112a.db', details:
     call: fun(...)
     error: could not find function "createAnnObjs.HUMANCHIP_DB"
   ERROR: loading failed
   * removing '/usr/bin/R-2.11.0/library/hgug4112a.db'
   #####################################
   What's the problem and how can I solve it?
   Thank you for any suggestions
   W


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