[BioC] How to show the definition of readFastq

Peng Yu pengyu.ut at gmail.com
Sun May 23 00:46:37 CEST 2010


On Sat, May 22, 2010 at 4:40 PM, Vincent Carey
<stvjc at channing.harvard.edu> wrote:
> getMethods(mname) will retrieve definitions for all methods named mname
> getMethod(mname, sig) will retrieve definition for specified signature
>
> for your query
>
>> getMethod("readFastq", "character")

Why the following command doesn't work for 'quality'?

> getMethod('quality', 'ShortReadQ')
Error in getMethod("quality", "ShortReadQ") :
  No method found for function "quality" and signature ShortReadQ
> showMethods('quality')
Function: quality (package Biostrings)
x="ANY"
x="FastqQuality"
    (inherited from: x="ANY")
x="ShortReadQ"
    (inherited from: x="ANY")


-- 
Regards,
Peng



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