[BioC] Lumi mouse mapping
Antonina Mitrofanova, PhD
antonina at c2b2.columbia.edu
Wed May 19 02:10:24 CEST 2010
Dear List,
I am analyzing mouse Illumina data. I am interested in probes mapping to
Akt1... Using BeadStudio, I was able to find such a probe (nuID
3Xqv.fD8.TUv4hRE7o, sequence
CCTGGGGTTTTTCTTAATTTATTTCATCCAGTTTGAGACCACACATGTGG)...
when I run this sequence against BLAST, it is a perfect match to Akt1 ...
also, in the annotation files (from here
http://www.compbio.group.cam.ac.uk/Resources/Annotation/), such as MouseWG-
6_V2_0_R0_11278593_A, it is listed as a 100% match to Akt1 (same in the older
versions of the annotation files)...
however, when i make a call to getSYMBOL
("3Xqv.fD8.TUv4hRE7o", 'lumiMouseAll.db'), the outcome is NA...
why is this happening?
thanks a lot!
Antonina
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