[BioC] AnnotationDbi quesion please help
David Lyon
david_lyon3 at yahoo.com
Wed May 19 01:21:05 CEST 2010
How do I get to output the mapped keys for the all of the following "head(qcdata, 50)"
eg : output the keys and values for "hugene10sttranscriptclusterENSEMBL has 20276 mapped keys (of 33297 keys)"
and all the others
Thanks for your help
> qcdata=capture.output(hugene10sttranscriptcluster())
> head(qcdata, 50)
[1] "Quality control information for hugene10sttranscriptcluster:"
[2] ""
[3] ""
[4] "This package has the following mappings:"
[5] ""
[6] "hugene10sttranscriptclusterACCNUM has 32969 mapped keys (of 33297 keys)"
[7] "hugene10sttranscriptclusterALIAS2PROBE has 74639 mapped keys (of 109070 keys)"
[8] "hugene10sttranscriptclusterCHR has 21890 mapped keys (of 33297 keys)"
[9] "hugene10sttranscriptclusterCHRLENGTHS has 25 mapped keys (of 25 keys)"
[10] "hugene10sttranscriptclusterCHRLOC has 21134 mapped keys (of 33297 keys)"
[11] "hugene10sttranscriptclusterCHRLOCEND has 21134 mapped keys (of 33297 keys)"
[12] "hugene10sttranscriptclusterENSEMBL has 20276 mapped keys (of 33297 keys)"
[13] "hugene10sttranscriptclusterENSEMBL2PROBE has 18678 mapped keys (of 19892 keys)"
[14] "hugene10sttranscriptclusterENTREZID has 21891 mapped keys (of 33297 keys)"
[15] "hugene10sttranscriptclusterENZYME has 2165 mapped keys (of 33297 keys)"
[16] "hugene10sttranscriptclusterENZYME2PROBE has 900 mapped keys (of 901 keys)"
[17] "hugene10sttranscriptclusterGENENAME has 21891 mapped keys (of 33297 keys)"
[18] "hugene10sttranscriptclusterGO has 18441 mapped keys (of 33297 keys)"
[19] "hugene10sttranscriptclusterGO2ALLPROBES has 11220 mapped keys (of 11236 keys)"
[20] "hugene10sttranscriptclusterGO2PROBE has 8224 mapped keys (of 8245 keys)"
[21] "hugene10sttranscriptclusterMAP has 21809 mapped keys (of 33297 keys)"
[22] "hugene10sttranscriptclusterOMIM has 13697 mapped keys (of 33297 keys)"
[23] "hugene10sttranscriptclusterPATH has 5447 mapped keys (of 33297 keys)"
[24] "hugene10sttranscriptclusterPATH2PROBE has 220 mapped keys (of 220 keys)"
[25] "hugene10sttranscriptclusterPFAM has 21342 mapped keys (of 33297 keys)"
[26] "hugene10sttranscriptclusterPMID has 21451 mapped keys (of 33297 keys)"
[27] "hugene10sttranscriptclusterPMID2PROBE has 244607 mapped keys (of 248847 keys)"
[28] "hugene10sttranscriptclusterPROSITE has 21342 mapped keys (of 33297 keys)"
[29] "hugene10sttranscriptclusterREFSEQ has 21721 mapped keys (of 33297 keys)"
[30] "hugene10sttranscriptclusterSYMBOL has 21891 mapped keys (of 33297 keys)"
[31] "hugene10sttranscriptclusterUNIGENE has 21474 mapped keys (of 33297 keys)"
[32] "hugene10sttranscriptclusterUNIPROT has 20875 mapped keys (of 33297 keys)"
[33] ""
[34] ""
[35] "Additional Information about this package:"
[36] ""
[37] "DB schema: HUMANCHIP_DB"
[38] "DB schema version: 2.0"
[39] "Organism: Homo sapiens"
[40] "Date for NCBI data: 2009-Sep1"
[41] "Date for GO data: 20090830"
[42] "Date for KEGG data: 2009-Sep16"
[43] "Date for Golden Path data: 2009-Jul5"
[44] "Date for IPI data: 2009-Jul29"
[45] "Date for Ensembl data: 2009-Jul14"
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