[BioC] help with illumina microarray (DASL)

[Pan Du]

Hi Katie

As long as you have matched Bioconductor annotation package for your data,
you can use annaffy to produce html document. The current lumi annotation
packages do not include DASL chips. But you can easily create one by
yourself using AnnotationDbi package.
BTW, when you input the Illumina data using lumiR, you can easily turn off
the nuID conversion by set convertNuID parameter as FALSE.


Pan


On 5/17/10 11:26 AM, "gilbert feng" <g-feng at northwestern.edu> wrote:

> From: "Taylor, Katie" <kt70 at leicester.ac.uk>
> Date: Mon, 17 May 2010 09:31:02 +0100
> To: "bioconductor at stat.math.ethz.ch" <bioconductor at stat.math.ethz.ch>
> Conversation: help with illumina microarray (DASL)
> Subject: [BioC] help with illumina microarray (DASL)
> 
> Hello,
> 
> I hope that you can help me. I am looking for a way to make a hyperlink
> table/html document which contains the annotation and data of my illumina
> microarray. Does anyone know if this can be done? I have found functions
> where I can look up a range or individual set of genes but I need the whole
> table. I've been using annaffy for some geo data that I downloaded but I was
> wondering if somthing like this could also be used for illumina? The nuID
> conversion is what makes me think that annaffy can't be used but I can't
> find anything in lumi which will do what I need. I would be really grateful
> of any help that you could give me.
> 
> Best Wishes,
> 
> Katie
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--
Pan Du, PhD
Research Assistant Professor
Northwestern University Biomedical Informatics Center
750 N. Lake Shore Drive, 11-176
Chicago, IL  60611
Office (312) 503-2360; Fax: (312) 503-5388
dupan (at) northwestern.edu