[BioC] Alignment viewer?

Erik Wright eswright at wisc.edu
Wed May 5 00:33:19 CEST 2010


Hi all,

Does anyone know of a package that I can use to view alignments in R?  Basically I want to display a long DNAStringSet sequence by sequence:
Seq1:  ACTAGGAGCTYA...
Seq2:  ACTACGAGCTCA...
Seq3:  ACTAGGACCTNA...
etc....

I just wanted to check if there is one already available so that I don't go off and reinvent the wheel.

Thanks!,
Erik



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