[BioC] Illumina annotation

[Marc Carlson]

Hi Katie,

It is hard to help you based on the open ended nature of your question
here.  You might want to have a look at the posting guide here so that
you can ask more specific questions:

http://www.bioconductor.org/docs/postingGuide.html


Also, if you are using the lumiHumanAll.db package, you probably want to
look at the lumi package and it's vignettes for some further clarifications.

http://www.bioconductor.org/packages/release/bioc/html/lumi.html




  Marc


On 05/04/2010 03:00 AM, Katie wrote:
> Hello,
>
> I am currently trying to annotate my Illumina microarray. I am not familiar 
> with bioconductor and I am therefore relying on vignettes for help. I am 
> trying to use lumiHumanAll.db to annotate my data but I can't get it to work. 
> If I follow the examples in the pdf I can get a couple of genes printed out 
> but I need to annotate the entire dataset. When I used GEO datasets with affy 
> package I was able to get the annotation and then merge that with the GEO data 
> and save a new file which contained both the GEO dataset and annotation. Is 
> there a script that will do that for illumina data? I really need any help 
> that anyone can give me. I am by no means a bioinformatician. 
>
> Thanks for your help.
>
> Katie
>
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