[BioC] snapCGH, runBioHMM, Error: segfault from C stack overflow
sfalcon at fhcrc.org
Fri Mar 19 21:40:10 CET 2010
On 3/16/10 9:15 AM, Seth Falcon wrote:
> On 3/16/10 3:39 AM, Ivanek, Robert wrote:
>> Hi Seth,
>> I tried it with a new version of R and BioConductor but I am still
>> getting the same error.
>> Any ideas?
> Can you make your MA.cgh2 object available (you could use a service like
> http://drop.io/) to share an rda file created using save(MA.cgh2,
> file="MA.cgh2.rda", compress=TRUE).
> If you send me a URL in private mail, I will see if I can reproduce the
> issue and investigate further.
A brief update:
Robert made a version of the data available and the error is
reproducible and seems to be coming from code within the snapCGH
package. The package's maintainer has been notified off-list with some
additional debugging details.
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